Motif IL_85877.1 Version IL_85877.1 of this group appears in releases 3.8 to 3.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_466 | 4V88 | 0.5337 | 1 | Non canonical cWW and near pair | A6 | A | 1753 | A | 1754 | A | 1756||A | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | ntWW | ncWW | cWW | |
2 | IL_4V8P_148 | 4V8P | 0.6034 | 1 | C2 | A | 93 | U | 94 | C | 95 | G | 97 | * | C | 67 | A | 68 | A | 69 | U | 70 | cWW | cWW | ncWW | cWW | ||
3 | IL_4KZD_004 | 4KZD | 0.4366 | 3 | Tandem non-canonical cWW pairs | R | G | 19 | A | 20 | A | 21 | C | 25 | * | G | 63 | A | 64 | G | 65 | C | 66 | cWW | cWW | cWW | ||
4 | IL_4TS2_005 | 4TS2 | 0.4419 | 3 | Tandem non-canonical cWW pairs | X+Y | G | 22 | A | 23 | A | 24 | C | 28 | * | G | 74 | A | 75 | G | 76 | C | 77 | cWW | cWW | ncwW | cWW | |
5 | IL_5OB3_002 | 5OB3 | 0.4342 | 3 | A | G | 12 | A | 13 | G | 14 | C | 18 | * | G | 55 | G | 56 | G | 57 | C | 58 | cWW | cWW | ncWB | cWW | ||
6 | IL_1KUQ_003 | 1KUQ | 0.5272 | 1 | Tandem non-canonical cWW pairs | B | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW | |
7 | IL_1G1X_003 | 1G1X | 0.4012 | 1 | Tandem non-canonical cWW pairs | D+E | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW | |
8 | IL_1G1X_006 | 1G1X | 0.4245 | 1 | Tandem non-canonical cWW pairs | I+J | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW | |
9 | IL_4LFB_029 | 4LFB | 0.4228 | 1 | Tandem non-canonical cWW pairs | A | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW | |
10 | IL_5J7L_033 | 5J7L | 0.3917 | 1 | Tandem non-canonical cWW pairs | AA | U | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | A | 743 | cWW | cWW | cwW | cWW | |
11 | IL_4WF9_109 | 4WF9 | 0.4276 | 0 | Tandem non-canonical cWW pairs | Y | C | 2 | U | 3 | G | 4 | G | 5 | * | C | 110 | A | 111 | G | 112 | G | 113 | cWW | ncWWa | ncWH | cWW | |
12 | IL_4WF9_110 | 4WF9 | 0.4754 | 0 | Tandem non-canonical cWW pairs | Y | G | 5 | U | 6 | G | 7 | A | 8 | * | U | 107 | G | 108 | C | 109 | C | 110 | cWW | ncWW | cWW | ||
13 | IL_4V88_461 | 4V88 | 0.5072 | 0 | Tandem non-canonical cWW pairs | A6 | C | 1509 | U | 1510 | U | 1511 | G | 1512 | * | C | 1495 | U | 1496 | U | 1497 | G | 1498 | cWW | cWw | cWW | ||
14 | IL_5EW4_001 | 5EW4 | 0.4754 | 0 | Tandem non-canonical cWW pairs | A+B | C | 8 | C | 9 | C | 10 | G | 11 | * | C | 14 | C | 15 | C | 16 | G | 17 | cWW | cWB | cwW | cWW | |
15 | IL_5C5W_001 | 5C5W | 0.3776 | 0 | Tandem non-canonical cWW pairs | A | C | 2 | C | 3 | U | 4 | G | 5 | * | C | 15||||5_556 | U | 16||||5_556 | A | 17||||5_556 | G | 18||||5_556 | cWW | cWW | cWw | cWW | |
16 | IL_5C5W_003 | 5C5W | 0.3776 | 0 | Tandem non-canonical cWW pairs | A | C | 2||||5_556 | C | 3||||5_556 | U | 4||||5_556 | G | 5||||5_556 | * | C | 15 | U | 16 | A | 17 | G | 18 | cWW | cWW | cWw | cWW | |
17 | IL_3R2D_002 | 3R2D | 0.3782 | 0 | Tandem non-canonical cWW pairs | R+S | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | cwW | cWw | cWW | |
18 | IL_5TBW_128 | 5TBW | 0.4056 | 0 | Tandem non-canonical cWW pairs | 1 | C | 3235 | U | 3236 | U | 3237 | G | 3238 | * | C | 3249 | U | 3250 | U | 3251 | G | 3252 | cWW | cwW | cWw | cWW | |
19 | IL_5TBW_129 | 5TBW | 0.3709 | 0 | Tandem non-canonical cWW pairs | 1 | C | 3311 | U | 3312 | U | 3313 | A | 3314 | * | U | 3300 | U | 3301 | U | 3302 | G | 3303 | cWW | cwW | cWw | cWW | |
20 | IL_280D_001 | 280D | 0.4593 | 0 | Tandem non-canonical cWW pairs | B+A | C | 17 | U | 18 | U | 19 | G | 20 | * | C | 5 | U | 6 | U | 7 | G | 8 | cWW | cwW | cWw | cWW | |
21 | IL_4V5O_162 | 4V5O | 0.3783 | 0 | Tandem non-canonical cWW pairs | BA | C | 1687 | C | 1688 | U | 1689 | A | 1690 | * | U | 1635 | C | 1636 | U | 1637 | G | 1638 | cWW | cWW | cWW | cWW | |
22 | IL_4EYA_003 | 4EYA | 0.4656 | 0 | Tandem non-canonical cWW pairs | e+f | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | cwW | cWw | cWW | |
23 | IL_4V88_473 | 4V88 | 0.4706 | 0 | Tandem non-canonical cWW pairs | A6 | C | 1675 | U | 1676 | C | 1677 | A | 1678 | * | U | 1723 | U | 1724 | U | 1725 | G | 1726 | cWW | cwW | cWW | ||
24 | IL_402D_001 | 402D | 0.4105 | 0 | Tandem non-canonical cWW pairs | B+A | C | 111 | C | 112 | A | 113 | G | 114 | * | C | 103 | C | 104 | A | 105 | G | 106 | cWW | cWW | cWW | cWW | |
25 | IL_5TBW_041 | 5TBW | 0.4268 | 0 | Tandem non-canonical cWW pairs | 1 | A | 1006 | U | 1007 | U | 1008 | A | 1009 | * | U | 1041 | U | 1042 | C | 1043 | U | 1044 | cWW | cWw | cWW | ||
26 | IL_4V8P_205 | 4V8P | 0.5160 | 0 | Tandem non-canonical cWW pairs | D1 | A | 1032 | U | 1033 | U | 1034 | A | 1035 | * | U | 1067 | U | 1068 | C | 1069 | U | 1070 | cWW | ncSW | cWw | cWW | |
27 | IL_4V5O_090 | 4V5O | 0.3948 | 0 | Tandem non-canonical cWW pairs | BA | G | 105 | U | 106 | U | 107 | A | 108 | * | U | 293 | U | 294 | U | 295 | C | 296 | cWW | cwW | cWw | cWW | |
28 | IL_4V88_391 | 4V88 | 0.3803 | 0 | Tandem non-canonical cWW pairs | A6 | G | 109 | U | 110 | U | 111 | A | 112 | * | U | 302 | U | 303 | U | 304 | C | 305 | cWW | cwW | cWw | cWW | |
29 | IL_4V88_429 | 4V88 | 0.3667 | 1 | Tandem non-canonical cWW pairs | A6 | G | 957 | U | 958 | U | 960 | U | 961 | * | G | 867 | G | 868 | A | 869 | C | 870 | cWW | ncWW | cWW | ||
30 | IL_4UYK_003 | 4UYK | 0.4586 | 0 | Tandem non-canonical cWW pairs | R | G | 117 | U | 118 | U | 119 | C | 120 | * | G | 81 | U | 82 | U | 83 | C | 84 | cWW | cwW | cWw | cWW | |
31 | IL_4IOA_041 | 4IOA | 0.4283 | 0 | Tandem non-canonical cWW pairs | X | G | 1196 | U | 1197 | C | 1198 | U | 1199 | * | A | 1175 | U | 1176 | U | 1177 | C | 1178 | cWW | cwW | cWW | cWW | |
32 | IL_3TZR_003 | 3TZR | 0.4312 | 0 | Tandem non-canonical cWW pairs | B+A | G | 102 | U | 103 | C | 104 | G | 105 | * | C | 62 | U | 63 | U | 64 | C | 65 | cWW | cwW | cWW | cWW | |
33 | IL_2PN3_004 | 2PN3 | 0.4641 | 0 | Tandem non-canonical cWW pairs | A+B | C | 62 | U | 63 | U | 64 | C | 65 | * | G | 102 | U | 103 | C | 104 | G | 105 | cWW | cWW | cWw | cWW | |
34 | IL_4V5O_085 | 4V5O | 0.4233 | 0 | Tandem non-canonical cWW pairs | BA | A | 593 | U | 594 | A | 595 | U | 596 | * | A | 23 | C | 24 | A | 25 | U | 26 | ncwW | cWW | cWW | cWW | cWW |
35 | IL_4WF9_085 | 4WF9 | 0.4482 | 1 | Tandem non-canonical cWW pairs | X | G | 2245 | U | 2246 | G | 2247 | G | 2248 | * | C | 2229 | C | 2231 | A | 2232 | C | 2233 | cWW | ncWW | ncWW | ncWW | |
36 | IL_4V88_431 | 4V88 | 0.3042 | 1 | Tandem non-canonical cWW pairs | A6 | C | 950 | A | 951 | A | 952 | G | 953 | * | C | 874 | G | 875 | G | 877 | G | 878 | cWW | cWW | cWW | cWW | |
37 | IL_4V5O_123 | 4V5O | 0.2992 | 1 | Tandem non-canonical cWW pairs | BA | C | 928 | A | 929 | A | 930 | A | 931 | * | U | 852 | G | 853 | G | 855 | G | 856 | cWW | ncWW | cWW | cWW | |
38 | IL_5TBW_100 | 5TBW | 0.2618 | 0 | Tandem non-canonical cWW pairs | 1 | U | 2735 | A | 2736 | C | 2737 | A | 2738 | * | U | 2718 | U | 2719 | G | 2720 | A | 2721 | cWW | cWW | cWW | ||
39 | IL_4V8P_261 | 4V8P | 0.1882 | 0 | Tandem non-canonical cWW pairs | D1 | U | 2707 | U | 2708 | G | 2709 | A | 2710 | * | U | 2724 | A | 2725 | C | 2726 | A | 2727 | cWW | cWW | cWW | cWW | |
40 | IL_5J7L_283 | 5J7L | 0.0000 | 0 | Tandem non-canonical cWW pairs | DA | G | 1038 | A | 1039 | A | 1040 | G | 1041 | * | C | 1114 | G | 1115 | G | 1116 | C | 1117 | cWW | cWW | cWW | cWW | |
41 | IL_4EYA_010 | 4EYA | 0.3111 | 0 | Tandem non-canonical cWW pairs | m+n | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | ncWW | |
42 | IL_4EYA_008 | 4EYA | 0.2513 | 0 | Tandem non-canonical cWW pairs | l+k | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | cWW | |
43 | IL_361D_001 | 361D | 0.3563 | 0 | Tandem non-canonical cWW pairs | B | U | 80 | G | 81 | G | 82 | G | 83 | * | C | 93 | C | 94 | U | 95 | G | 96 | cWW | ncWWa | cWW | ||
44 | IL_4V8P_285 | 4V8P | 0.3276 | 0 | Tandem non-canonical cWW pairs | D1 | C | 3271 | U | 3272 | U | 3273 | A | 3274 | * | U | 3260 | U | 3261 | U | 3262 | G | 3263 | cWW | cWw | cWw | cWW | |
45 | IL_4K27_003 | 4K27 | 0.4051 | 0 | Tandem non-canonical cWW pairs | U | C | 12 | C | 13 | U | 14 | G | 15 | * | C | 41 | C | 42 | U | 43 | G | 44 | cWW | cWW | cWW | cWW | |
46 | IL_4K27_002 | 4K27 | 0.4144 | 0 | Tandem non-canonical cWW pairs | U | C | 45 | C | 46 | U | 47 | G | 48 | * | C | 8 | C | 9 | U | 10 | G | 11 | cWW | cWW | cWW | cWW | |
47 | IL_5EW4_002 | 5EW4 | 0.3088 | 0 | Tandem non-canonical cWW pairs | A+B | C | 14 | C | 15 | C | 16 | G | 17 | * | C | 8 | C | 9 | C | 10 | G | 11 | cWW | ncWB | ncWB | cWW | |
48 | IL_4GMA_008 | 4GMA | 0.4080 | 0 | Tandem non-canonical cWW pairs | Z | U | 186 | U | 187 | C | 188 | G | 189 | * | U | 205 | G | 206 | A | 207 | A | 208 | cWW | ncWW | |||
49 | IL_4K27_001 | 4K27 | 0.3091 | 0 | Tandem non-canonical cWW pairs | U | C | 49 | C | 50 | U | 51 | G | 52 | * | C | 4 | C | 5 | U | 6 | G | 7 | cWW | cWW | cWW | cWW | |
50 | IL_3CUL_002 | 3CUL | 0.3573 | 0 | Tandem non-canonical cWW pairs | C | G | 56 | U | 57 | G | 58 | G | 59 | * | C | 87 | A | 88 | G | 89 | C | 90 | cWW | ncWWa | ncWW | cWW | |
51 | IL_4V5O_122 | 4V5O | 0.3702 | 0 | Tandem non-canonical cWW pairs | BA | A | 849 | G | 850 | U | 851 | U | 852 | * | A | 931 | G | 932 | A | 933 | U | 934 | cWW | cWW | ncWW | cWW | |
52 | IL_4V88_430 | 4V88 | 0.3591 | 0 | Tandem non-canonical cWW pairs | A6 | G | 871 | G | 872 | U | 873 | C | 874 | * | G | 953 | G | 954 | A | 955 | C | 956 | cWW | cWW | cWW | ||
53 | IL_5LQO_002 | 5LQO | 0.2744 | 0 | Tandem non-canonical cWW pairs | A+B | G | 4 | G | 5 | A | 6 | C | 7 | * | G | 4 | G | 5 | A | 6 | C | 7 | cWW | cWW | cWW | cWW | |
54 | IL_4V88_432 | 4V88 | 0.4017 | 0 | Tandem non-canonical cWW pairs | A6 | G | 885 | U | 886 | A | 887 | U | 888 | * | A | 924 | G | 925 | A | 926 | C | 927 | cWW | cWW | cWW | ||
55 | IL_4P8Z_002 | 4P8Z | 0.3773 | 0 | Tandem non-canonical cWW pairs | A | G | 5 | G | 6 | G | 7 | U | 8 | * | A | 181 | G | 182 | A | 183 | C | 184 | cWW | cWW | cWW | ||
56 | IL_4P95_002 | 4P95 | 0.3375 | 0 | Tandem non-canonical cWW pairs | A | G | 223 | G | 224 | G | 225 | U | 226 | * | A | 15 | G | 16 | A | 17 | C | 18 | cWW | cWW | cWW | ||
57 | IL_4V5O_165 | 4V5O | 0.3165 | 0 | Tandem non-canonical cWW pairs | BA | A | 1676 | A | 1677 | U | 1678 | A | 1679 | * | U | 1646 | U | 1647 | C | 1648 | U | 1649 | cWW | cWWa | ncwW | cWW | |
58 | IL_1D4R_001 | 1D4R | 0.3380 | 0 | Tandem non-canonical cWW pairs | B+A | G | 22 | A | 23 | C | 24 | C | 25 | * | G | 4 | A | 5 | C | 6 | C | 7 | cWW | cWWa | cWW | cWW | |
59 | IL_3WBM_003 | 3WBM | 0.2889 | 0 | Tandem non-canonical cWW pairs | Y+X | A | 10 | C | 11 | C | 12 | C | 13 | * | G | 14 | A | 15 | C | 16 | U | 17 | cWW | ncWB | cWW | cWW | |
60 | IL_3WBM_002 | 3WBM | 0.2994 | 0 | Tandem non-canonical cWW pairs | X+Y | A | 10 | C | 11 | C | 12 | C | 13 | * | G | 14 | A | 15 | C | 16 | U | 17 | cWW | ncWB | ncWW | cWW | |
61 | IL_1MFQ_004 | 1MFQ | 0.2880 | 0 | Tandem non-canonical cWW pairs | A | G | 138 | A | 139 | C | 140 | C | 141 | * | G | 156 | A | 157 | C | 158 | C | 159 | cWW | ncWW | ncWW | cWW | |
62 | IL_1D4R_003 | 1D4R | 0.3551 | 0 | Tandem non-canonical cWW pairs | A+B | G | 22 | A | 23 | C | 24 | C | 25 | * | G | 4 | A | 5 | C | 6 | C | 7 | cWW | cWW | cWW | cWW | |
63 | IL_1JID_002 | 1JID | 0.3372 | 0 | Tandem non-canonical cWW pairs | B | G | 138 | A | 139 | C | 140 | C | 141 | * | G | 156 | A | 157 | C | 158 | C | 159 | cWW | cWW | cWW | cWW | |
64 | IL_4V88_438 | 4V88 | 0.3048 | 0 | Tandem non-canonical cWW pairs | A6 | G | 1074 | C | 1075 | A | 1076 | C | 1077 | * | G | 1041 | G | 1042 | A | 1043 | U | 1044 | cWW | ncBW | cWW | cWW | |
65 | IL_4V5O_129 | 4V5O | 0.3204 | 0 | Tandem non-canonical cWW pairs | BA | G | 1046 | C | 1047 | A | 1048 | C | 1049 | * | G | 1019 | G | 1020 | A | 1021 | U | 1022 | ncWW | ncBW | cWW | cWW | |
66 | IL_2IL9_001 | 2IL9 | 0.5378 | 0 | Tandem non-canonical cWW pairs | A | G | 6079 | U | 6080 | C | 6081 | U | 6082 | * | G | 6110 | G | 6111 | A | 6112 | C | 6113 | cWW | cWW | |||
67 | IL_5J7L_296 | 5J7L | 0.5434 | 1 | Tandem non-canonical cWW pairs | DA | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1557 | C | 1558 | G | 1560 | C | 1561 | cWW | cWW | tWW | cWW | |
68 | IL_6CF2_001 | 6CF2 | 0.6765 | 1 | Non canonical cWW and near pair | G | G | 27 | A | 28 | A | 30 | C | 31 | * | G | 5 | G | 6 | A | 7 | C | 8 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUG*CUUG | 7 |
GAGAG*UGGU | 4 |
GACC*GACC | 4 |
CCUG*CCUG | 3 |
GAAGGAC*GAGC | 2 |
CCCG*CCCG | 2 |
CCUG*CUAG | 2 |
CUUA*UUUG | 2 |
AUUA*UUCU | 2 |
GUUA*UUUC | 2 |
GGGU*AGAC | 2 |
ACCC*GACU | 2 |
GCAC*GGAU | 2 |
AAAAG*CGCU | 1 |
AUCAG*CAAU | 1 |
GAGGGUC*GGGC | 1 |
UAGAG*UGGA | 1 |
CUGG*CAGG | 1 |
GUGA*UGCC | 1 |
CCUA*UCUG | 1 |
CUCA*UUUG | 1 |
CCAG*CCAG | 1 |
GUUUU*GGAC | 1 |
GUUC*GUUC | 1 |
GUCU*AUUC | 1 |
GUCG*CUUC | 1 |
CUUC*GUCG | 1 |
AUAU*ACAU | 1 |
GUGG*CGCAC | 1 |
CAAG*CGGGG | 1 |
CAAA*UGGGG | 1 |
UACA*UUGA | 1 |
UUGA*UACA | 1 |
GAAG*CGGC | 1 |
UGGG*CCUG | 1 |
UUCG*UGAA | 1 |
GUGG*CAGC | 1 |
AGUU*AGAU | 1 |
GGUC*GGAC | 1 |
GGAC*GGAC | 1 |
GUAU*AGAC | 1 |
AAUA*UUCU | 1 |
GUCU*GGAC | 1 |
GAAG*CCUGC | 1 |
GAAAC*GGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UU*UU | 12 |
AGA*GG | 5 |
CU*CU | 4 |
AC*AC | 4 |
UC*UU | 3 |
UU*UC | 3 |
AAGGA*AG | 2 |
UG*AG | 2 |
CC*CC | 2 |
CU*UA | 2 |
AA*GGG | 2 |
UC*GA | 2 |
GU*GA | 2 |
GG*GA | 2 |
CC*AC | 2 |
CA*GA | 2 |
AAA*GC | 1 |
UCA*AA | 1 |
AGGGU*GG | 1 |
UG*GC | 1 |
CA*CA | 1 |
UUU*GA | 1 |
UA*CA | 1 |
UG*GCA | 1 |
AC*UG | 1 |
UG*AC | 1 |
AA*GG | 1 |
GG*CU | 1 |
GA*GA | 1 |
UA*GA | 1 |
AU*UC | 1 |
AA*CUG | 1 |
AAA*GA | 1 |
- Annotations
-
- Tandem non-canonical cWW pairs (64)
- Non canonical cWW and near pair (2)
- (2)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.49 | Max 0.95
Coloring options: