IL_4V5P_372

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V5P|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_372 not in the Motif Atlas

Homologous match to IL_9DFE_009

Geometric discrepancy: 0.2025

The information below is about IL_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5P|1|BA|C|280
4V5P|1|BA|G|281
4V5P|1|BA|A|282
4V5P|1|BA|A|283
4V5P|1|BA|U|284
*
4V5P|1|BA|A|357
4V5P|1|BA|U|358
4V5P|1|BA|A|359
4V5P|1|BA|G|360

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains