3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGCC*GGUAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5Q_237 not in the Motif Atlas
Geometric match to IL_1GID_008
Geometric discrepancy: 0.2914
The information below is about IL_1GID_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
36

Unit IDs

4V5Q|1|DA|G|272|||D
4V5Q|1|DA|G|272|||E
4V5Q|1|DA|C|272|||F
4V5Q|1|DA|C|272|||G
*
4V5Q|1|DA|G|363|||C
4V5Q|1|DA|G|363|||D
4V5Q|1|DA|U|363|||E
4V5Q|1|DA|A|363|||F
4V5Q|1|DA|C|364

Current chains

Chain DA
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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