IL_4V5Q_368

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAG*CGCC

Length

9 nucleotides

Bulged bases

4V5Q|1|DA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_368 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.398

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V5Q|1|DA|G|1487
4V5Q|1|DA|G|1488
4V5Q|1|DA|U|1489
4V5Q|1|DA|A|1490
4V5Q|1|DA|G|1491
*
4V5Q|1|DA|C|1499
4V5Q|1|DA|G|1500
4V5Q|1|DA|C|1501
4V5Q|1|DA|C|1502

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2