IL_4V5S_189
3D structure
- PDB id
- 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V5S|1|CA|A|532, 4V5S|1|CA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5S_189 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1559
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5S|1|CA|G|515
4V5S|1|CA|U|516
4V5S|1|CA|G|517
4V5S|1|CA|C|518
4V5S|1|CA|C|519
4V5S|1|CA|A|520
4V5S|1|CA|G|521
*
4V5S|1|CA|C|528
4V5S|1|CA|G|529
4V5S|1|CA|G|530
4V5S|1|CA|U|531
4V5S|1|CA|A|532
4V5S|1|CA|A|533
4V5S|1|CA|U|534
4V5S|1|CA|A|535
4V5S|1|CA|C|536
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CC
- 30S RIBOSOMAL PROTEIN S3
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CX
- MRNA
- Chain CY
- Transfer RNA; tRNA
Coloring options: