IL_4V5Y_112

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4V5Y|1|BB|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_112 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1359

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4V5Y|1|BB|G|1059
4V5Y|1|BB|U|1060
4V5Y|1|BB|U|1061
4V5Y|1|BB|G|1062
*
4V5Y|1|BB|C|1076
4V5Y|1|BB|A|1077
4V5Y|1|BB|U|1078
4V5Y|1|BB|C|1079

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BI

50S ribosomal protein L11

Chain BM

50S ribosomal protein L16