IL_4V61_008

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAAC*GGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_008 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.1441

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V61|1|AA|G|112
4V61|1|AA|A|113
4V61|1|AA|A|114
4V61|1|AA|C|115
*
4V61|1|AA|G|202
4V61|1|AA|G|203
4V61|1|AA|C|204

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

Ribosomal Protein S16

Chain AQ

Ribosomal Protein S17

Chain AT

Ribosomal Protein S20