IL_4V61_010

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAACAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V61|1|AA|U|157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_010 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1312

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V61|1|AA|G|131
4V61|1|AA|A|132
4V61|1|AA|A|133
4V61|1|AA|C|134
4V61|1|AA|A|135
4V61|1|AA|A|136
4V61|1|AA|C|137
*
4V61|1|AA|G|152
4V61|1|AA|C|153
4V61|1|AA|U|154
4V61|1|AA|A|155
4V61|1|AA|A|156
4V61|1|AA|U|157
4V61|1|AA|A|158
4V61|1|AA|C|159

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

Ribosomal Protein S20