IL_4V61_011

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAUUAG*CGAUGAUC

Length

14 nucleotides

Bulged bases

4V61|1|AA|U|215, 4V61|1|AA|U|251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_011 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1535

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|AA|G|213
4V61|1|AA|A|214
4V61|1|AA|U|215
4V61|1|AA|U|216
4V61|1|AA|A|217
4V61|1|AA|G|218
*
4V61|1|AA|C|248
4V61|1|AA|G|249
4V61|1|AA|A|250
4V61|1|AA|U|251
4V61|1|AA|G|252
4V61|1|AA|A|253
4V61|1|AA|U|254
4V61|1|AA|C|255

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

Ribosomal Protein S12

Chain AQ

Ribosomal Protein S17