IL_4V61_021

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUUU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_021 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1391

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

4V61|1|AA|U|539
4V61|1|AA|U|540
4V61|1|AA|U|541
4V61|1|AA|U|542
*
4V61|1|AA|A|593
4V61|1|AA|C|594
4V61|1|AA|C|595
4V61|1|AA|A|596

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

Ribosomal Protein S8

Chain AO

Ribosomal Protein S15

Chain AQ

Ribosomal Protein S17