IL_4V61_023

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_023 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.1274

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.3

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

4V61|1|AA|G|545
4V61|1|AA|U|546
*
4V61|1|AA|A|588
4V61|1|AA|A|589
4V61|1|AA|A|590
4V61|1|AA|C|591

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

Ribosomal Protein S8

Chain AQ

Ribosomal Protein S17