IL_4V61_026
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- UAGGG*UGGG
- Length
- 9 nucleotides
- Bulged bases
- 4V61|1|AA|G|613
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_026 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0821
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V61|1|AA|U|610
4V61|1|AA|A|611
4V61|1|AA|G|612
4V61|1|AA|G|613
4V61|1|AA|G|614
*
4V61|1|AA|U|688
4V61|1|AA|G|689
4V61|1|AA|G|690
4V61|1|AA|G|691
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AF
- Ribosomal Protein S6
- Chain AO
- Ribosomal Protein S15
- Chain AR
- Ribosomal Protein S18
- Chain AU
- Ribosomal Protein S21
Coloring options: