IL_4V61_032

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_032 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.117

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V61|1|AA|G|836
4V61|1|AA|G|837
4V61|1|AA|A|838
4V61|1|AA|G|839
4V61|1|AA|U|840
4V61|1|AA|A|841
4V61|1|AA|C|842
4V61|1|AA|G|843
*
4V61|1|AA|U|854
4V61|1|AA|G|855
4V61|1|AA|A|856
4V61|1|AA|A|857
4V61|1|AA|A|858
4V61|1|AA|C|859

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

Ribosomal Protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA