IL_4V61_040

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

4V61|1|AA|C|1148, 4V61|1|AA|A|1149

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_040 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.115

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V61|1|AA|G|1006
4V61|1|AA|G|1007
*
4V61|1|AA|U|1147
4V61|1|AA|C|1148
4V61|1|AA|A|1149
4V61|1|AA|U|1150
4V61|1|AA|C|1151

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AJ

Ribosomal Protein S10

Chain AN

Ribosomal Protein S14