IL_4V61_043

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUUGC*GAACCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_043 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1898

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V61|1|AA|G|1073
4V61|1|AA|U|1074
4V61|1|AA|U|1075
4V61|1|AA|G|1076
4V61|1|AA|C|1077
*
4V61|1|AA|G|1092
4V61|1|AA|A|1093
4V61|1|AA|A|1094
4V61|1|AA|C|1095
4V61|1|AA|C|1096
4V61|1|AA|C|1097

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

Ribosomal Protein S9

Chain AJ

Ribosomal Protein S10