IL_4V61_045

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_045 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1096

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V61|1|AA|G|1190
4V61|1|AA|C|1191
4V61|1|AA|C|1192
*
4V61|1|AA|G|1241
4V61|1|AA|U|1242
4V61|1|AA|C|1243

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

Ribosomal Protein S7

Chain AI

Ribosomal Protein S9

Chain AM

Ribosomal Protein S13