IL_4V61_047

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUCG*CUAACC

Length

10 nucleotides

Bulged bases

4V61|1|AA|C|1205, 4V61|1|AA|A|1228, 4V61|1|AA|C|1229

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_047 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.183

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V61|1|AA|G|1203
4V61|1|AA|U|1204
4V61|1|AA|C|1205
4V61|1|AA|G|1206
*
4V61|1|AA|C|1225
4V61|1|AA|U|1226
4V61|1|AA|A|1227
4V61|1|AA|A|1228
4V61|1|AA|C|1229
4V61|1|AA|C|1230

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AJ

Ribosomal Protein S10

Chain AN

Ribosomal Protein S14