IL_4V61_049

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_049 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1592

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.3

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V61|1|AA|C|1251
4V61|1|AA|G|1252
4V61|1|AA|G|1253
4V61|1|AA|A|1254
4V61|1|AA|U|1255
4V61|1|AA|U|1256
*
4V61|1|AA|A|1277
4V61|1|AA|U|1278
4V61|1|AA|G|1279
4V61|1|AA|A|1280
4V61|1|AA|A|1281
4V61|1|AA|G|1282

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AM

Ribosomal Protein S13

Chain AS

Ribosomal Protein S19