IL_4V61_051

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_051 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1482

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|AA|G|1350
4V61|1|AA|C|1351
4V61|1|AA|C|1352
4V61|1|AA|C|1353
*
4V61|1|AA|G|1446
4V61|1|AA|U|1447
4V61|1|AA|A|1448
4V61|1|AA|A|1449
4V61|1|AA|C|1450

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

Ribosomal Protein S5

Chain BA

Large subunit ribosomal RNA; LSU rRNA