IL_4V61_058

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_058 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1107

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

4V61|1|AA|G|1384
4V61|1|AA|U|1385
4V61|1|AA|C|1386
*
4V61|1|AA|G|1413
4V61|1|AA|C|1414
4V61|1|AA|C|1415

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

Ribosomal Protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BR

Ribosomal Protein L19