IL_4V61_066

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_066 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2667

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V61|1|BA|C|223
4V61|1|BA|G|224
4V61|1|BA|U|225
4V61|1|BA|A|226
4V61|1|BA|G|227
4V61|1|BA|U|228
4V61|1|BA|A|229
4V61|1|BA|G|230
*
4V61|1|BA|C|238
4V61|1|BA|G|239
4V61|1|BA|A|240
4V61|1|BA|A|241
4V61|1|BA|A|242
4V61|1|BA|U|243
4V61|1|BA|G|244

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B5

Ribosomal Protein L35

Chain BN

Ribosomal Protein L15