IL_4V61_076

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_076 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.207

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V61|1|BA|U|714
4V61|1|BA|G|715
4V61|1|BA|A|716
4V61|1|BA|A|717
4V61|1|BA|G|718
*
4V61|1|BA|U|735
4V61|1|BA|G|736
4V61|1|BA|G|737
4V61|1|BA|A|738
4V61|1|BA|G|739

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2