IL_4V61_086

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCCCUAAAUG*CUG

Length

13 nucleotides

Bulged bases

4V61|1|BA|U|1036, 4V61|1|BA|U|1040

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_086 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.2119

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V61|1|BA|C|1032
4V61|1|BA|C|1033
4V61|1|BA|C|1034
4V61|1|BA|C|1035
4V61|1|BA|U|1036
4V61|1|BA|A|1037
4V61|1|BA|A|1038
4V61|1|BA|A|1039
4V61|1|BA|U|1040
4V61|1|BA|G|1041
*
4V61|1|BA|C|1176
4V61|1|BA|U|1177
4V61|1|BA|G|1178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

Ribosomal Protein L13

Chain BS

Ribosomal Protein L20