IL_4V61_098

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCAAG*CAC

Length

8 nucleotides

Bulged bases

4V61|1|BA|A|1353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_098 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.2217

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V61|1|BA|G|1340
4V61|1|BA|C|1341
4V61|1|BA|A|1342
4V61|1|BA|A|1343
4V61|1|BA|G|1344
*
4V61|1|BA|C|1352
4V61|1|BA|A|1353
4V61|1|BA|C|1354

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

Ribosomal Protein L22