IL_4V61_106

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UCAAG*CGAGUA

Length

11 nucleotides

Bulged bases

4V61|1|BA|G|1557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_106 not in the Motif Atlas

Geometric match to IL_5TBW_071

Geometric discrepancy: 0.3505

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V61|1|BA|U|1486
4V61|1|BA|C|1487
4V61|1|BA|A|1488
4V61|1|BA|A|1489
4V61|1|BA|G|1490
*
4V61|1|BA|C|1554
4V61|1|BA|G|1555
4V61|1|BA|A|1556
4V61|1|BA|G|1557
4V61|1|BA|U|1558
4V61|1|BA|A|1559

Current chains

Chain BA

23S rRNA

Nearby chains