IL_4V61_109

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_109 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.27

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V61|1|BA|C|1560
4V61|1|BA|C|1561
4V61|1|BA|A|1562
4V61|1|BA|G|1563
4V61|1|BA|G|1564
*
4V61|1|BA|C|1575
4V61|1|BA|U|1576
4V61|1|BA|G|1577
4V61|1|BA|A|1578
4V61|1|BA|A|1579
4V61|1|BA|G|1580

Current chains

Chain BA

23S rRNA

Nearby chains