IL_4V61_110

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GACAAC*GGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_110 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.1965

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|G|1687
4V61|1|BA|A|1688
4V61|1|BA|C|1689
4V61|1|BA|A|1690
4V61|1|BA|A|1691
4V61|1|BA|C|1692
*
4V61|1|BA|G|2018
4V61|1|BA|G|2019
4V61|1|BA|C|2020

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

4.8S rRNA

Chain BF

Ribosomal Protein L3

Chain BP

Ribosomal Protein L17