IL_4V61_143

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V61|1|BA|G|2795, 4V61|1|BA|G|2798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_143 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.2641

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|U|2653
4V61|1|BA|U|2654
4V61|1|BA|G|2655
4V61|1|BA|A|2656
4V61|1|BA|G|2657
*
4V61|1|BA|C|2792
4V61|1|BA|A|2793
4V61|1|BA|A|2794
4V61|1|BA|G|2795
4V61|1|BA|A|2796
4V61|1|BA|U|2797
4V61|1|BA|G|2798
4V61|1|BA|A|2799
4V61|1|BA|G|2800

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

Ribosomal Protein L3

Chain BL

Ribosomal Protein L13