IL_4V61_145

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

4V61|1|BA|G|2672

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_145 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.2427

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|C|2669
4V61|1|BA|U|2670
4V61|1|BA|A|2671
4V61|1|BA|G|2672
4V61|1|BA|U|2673
4V61|1|BA|A|2674
4V61|1|BA|C|2675
*
4V61|1|BA|G|2680
4V61|1|BA|G|2681
4V61|1|BA|A|2682
4V61|1|BA|C|2683
4V61|1|BA|C|2684
4V61|1|BA|G|2685

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

Ribosomal Protein L6