IL_4V61_149

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAUAAC*GUAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_149 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1749

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|G|2755
4V61|1|BA|A|2756
4V61|1|BA|U|2757
4V61|1|BA|A|2758
4V61|1|BA|A|2759
4V61|1|BA|C|2760
*
4V61|1|BA|G|2780
4V61|1|BA|U|2781
4V61|1|BA|A|2782
4V61|1|BA|A|2783
4V61|1|BA|G|2784
4V61|1|BA|C|2785

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6

Chain BL

Ribosomal Protein L13