IL_4V61_154

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

4V61|1|BC|C|80

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_154 not in the Motif Atlas

Geometric match to IL_7RQB_108

Geometric discrepancy: 0.387

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V61|1|BC|G|39
4V61|1|BC|G|40
*
4V61|1|BC|U|79
4V61|1|BC|C|80
4V61|1|BC|C|81

Current chains

Chain BC

4.8S rRNA

Nearby chains

Chain BP

Ribosomal Protein L17