IL_4V61_162
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- GCGAACUG*CUUAGUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V61_162 not in the Motif Atlas
- Homologous match to IL_4WF9_008
- Geometric discrepancy: 0.2187
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V61|1|BA|G|172
4V61|1|BA|C|173
4V61|1|BA|G|174
4V61|1|BA|A|175
4V61|1|BA|A|176
4V61|1|BA|C|177
4V61|1|BA|U|178
4V61|1|BA|G|179
*
4V61|1|BA|C|186
4V61|1|BA|U|187
4V61|1|BA|U|188
4V61|1|BA|A|189
4V61|1|BA|G|190
4V61|1|BA|U|191
4V61|1|BA|A|192
4V61|1|BA|G|193
4V61|1|BA|C|194
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B4
- Ribosomal Protein L34
- Chain B5
- Ribosomal Protein L35
- Chain BN
- Ribosomal Protein L15
- Chain BY
- Ribosomal Protein L28
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