IL_4V61_171

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_171 not in the Motif Atlas

Homologous match to IL_9DFE_029

Geometric discrepancy: 0.2427

The information below is about IL_9DFE_029

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

4V61|1|BA|U|880
4V61|1|BA|U|881
4V61|1|BA|U|882
*
4V61|1|BA|A|914
4V61|1|BA|G|915
4V61|1|BA|G|916

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

Ribosomal Protein L16