IL_4V61_183

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGGGCG*CGAUCUG

Length

13 nucleotides

Bulged bases

4V61|1|BA|A|1995

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_183 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3133

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|C|1777
4V61|1|BA|G|1778
4V61|1|BA|G|1779
4V61|1|BA|G|1780
4V61|1|BA|C|1781
4V61|1|BA|G|1782
*
4V61|1|BA|C|1993
4V61|1|BA|G|1994
4V61|1|BA|A|1995
4V61|1|BA|U|1996
4V61|1|BA|C|1997
4V61|1|BA|U|1998
4V61|1|BA|G|1999

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

Ribosomal Protein L2