IL_4V61_217

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGAG*CAUAC

Length

9 nucleotides

Bulged bases

4V61|1|BA|U|1593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_217 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.4685

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V61|1|BA|G|1453
4V61|1|BA|G|1454
4V61|1|BA|A|1455
4V61|1|BA|G|1456
*
4V61|1|BA|C|1591
4V61|1|BA|A|1592
4V61|1|BA|U|1593
4V61|1|BA|A|1594
4V61|1|BA|C|1595

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2