IL_4V61_228

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V61|1|BA|A|2559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_228 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.2808

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V61|1|BA|U|2539
4V61|1|BA|G|2540
*
4V61|1|BA|C|2557
4V61|1|BA|A|2558
4V61|1|BA|A|2559
4V61|1|BA|G|2560

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BL

Ribosomal Protein L13