IL_4V61_229

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AACG*CAGUU

Length

9 nucleotides

Bulged bases

4V61|1|BA|A|2619

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V61_229 not in the Motif Atlas

Homologous match to IL_5J7L_343

Geometric discrepancy: 0.5923

The information below is about IL_5J7L_343

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|A|2606
4V61|1|BA|A|2607
4V61|1|BA|C|2608
4V61|1|BA|G|2609
*
4V61|1|BA|C|2618
4V61|1|BA|A|2619
4V61|1|BA|G|2620
4V61|1|BA|U|2621
4V61|1|BA|U|2622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2