IL_4V64_028

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V64|1|AA|A|532, 4V64|1|AA|U|534, 4V64|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V64_028 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1807

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V64|1|AA|G|515
4V64|1|AA|U|516
4V64|1|AA|G|517
4V64|1|AA|C|518
4V64|1|AA|C|519
4V64|1|AA|A|520
4V64|1|AA|G|521
*
4V64|1|AA|C|528
4V64|1|AA|G|529
4V64|1|AA|G|530
4V64|1|AA|U|531
4V64|1|AA|A|532
4V64|1|AA|A|533
4V64|1|AA|U|534
4V64|1|AA|A|535
4V64|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12