3D structure

PDB id
4V64 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
4V64|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V64_038 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1222
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

4V64|1|AA|U|684
4V64|1|AA|G|685
4V64|1|AA|U|686
4V64|1|AA|A|687
4V64|1|AA|G|688
*
4V64|1|AA|C|699
4V64|1|AA|G|700
4V64|1|AA|U|701
4V64|1|AA|A|702
4V64|1|AA|G|703
4V64|1|AA|A|704
4V64|1|AA|G|705
4V64|1|AA|A|706

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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