IL_4V65_009

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V65|1|A1|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.5749

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V65|1|A1|G|147
4V65|1|A1|G|148
4V65|1|A1|A|149
4V65|1|A1|U|150
4V65|1|A1|A|151
4V65|1|A1|A|152
4V65|1|A1|C|153
*
4V65|1|A1|G|168
4V65|1|A1|C|169
4V65|1|A1|U|170
4V65|1|A1|A|171
4V65|1|A1|A|172
4V65|1|A1|U|173
4V65|1|A1|A|174
4V65|1|A1|C|175

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S20