IL_4V65_042

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_042 not in the Motif Atlas

Geometric match to IL_6CZR_155

Geometric discrepancy: 0.2922

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V65|1|A1|C|1129
4V65|1|A1|A|1130
4V65|1|A1|G|1131
4V65|1|A1|C|1132
*
4V65|1|A1|G|1142
4V65|1|A1|G|1143

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AW

30S ribosomal protein S9

Chain AX

30S ribosomal protein S10