IL_4V65_057

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGU*AACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_057 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3492

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V65|1|BB|G|85
4V65|1|BB|G|86
4V65|1|BB|U|87
*
4V65|1|BB|A|94
4V65|1|BB|A|95
4V65|1|BB|C|96
4V65|1|BB|C|97

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L24

Chain BQ

50S ribosomal protein L29