IL_4V65_073

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_073 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.4286

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V65|1|BB|G|864
4V65|1|BB|C|865
4V65|1|BB|A|866
4V65|1|BB|C|867
4V65|1|BB|U|868
*
4V65|1|BB|A|909
4V65|1|BB|A|910
4V65|1|BB|A|911
4V65|1|BB|C|912

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L16