IL_4V65_080

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V65|1|BB|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_080 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3359

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V65|1|BB|G|1031
4V65|1|BB|A|1032
4V65|1|BB|U|1033
4V65|1|BB|G|1034
*
4V65|1|BB|C|1121
4V65|1|BB|G|1122
4V65|1|BB|C|1123

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BF

50S ribosomal protein L16

Chain BX

50S ribosomal protein L36