IL_4V65_082

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V65|1|BB|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_082 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3508

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V65|1|BB|C|1043
4V65|1|BB|C|1044
4V65|1|BB|C|1045
4V65|1|BB|A|1046
4V65|1|BB|G|1047
4V65|1|BB|A|1048
4V65|1|BB|C|1049
4V65|1|BB|A|1050
4V65|1|BB|G|1051
*
4V65|1|BB|U|1108
4V65|1|BB|C|1109
4V65|1|BB|G|1110
4V65|1|BB|A|1111
4V65|1|BB|G|1112

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6