IL_4V65_117

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_117 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.3053

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V65|1|BB|C|2652
4V65|1|BB|U|2653
4V65|1|BB|A|2654
4V65|1|BB|G|2655
4V65|1|BB|U|2656
4V65|1|BB|A|2657
4V65|1|BB|C|2658
*
4V65|1|BB|G|2663
4V65|1|BB|G|2664
4V65|1|BB|A|2665
4V65|1|BB|C|2666
4V65|1|BB|C|2667
4V65|1|BB|G|2668

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BD

50S ribosomal protein L14