IL_4V65_121

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

4V65|1|BB|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_121 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.2561

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V65|1|BB|G|2737
4V65|1|BB|A|2738
4V65|1|BB|U|2739
4V65|1|BB|A|2740
4V65|1|BB|A|2741
4V65|1|BB|G|2742
*
4V65|1|BB|C|2762
4V65|1|BB|G|2763
4V65|1|BB|A|2764
4V65|1|BB|A|2765
4V65|1|BB|A|2766
4V65|1|BB|C|2767

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain B6

50S ribosomal protein L13

Chain BX

50S ribosomal protein L36