IL_4V65_130
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V65|1|A1|A|532, 4V65|1|A1|U|534, 4V65|1|A1|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V65_130 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.469
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V65|1|A1|G|515
4V65|1|A1|U|516
4V65|1|A1|G|517
4V65|1|A1|C|518
4V65|1|A1|C|519
4V65|1|A1|A|520
4V65|1|A1|G|521
*
4V65|1|A1|C|528
4V65|1|A1|G|529
4V65|1|A1|G|530
4V65|1|A1|U|531
4V65|1|A1|A|532
4V65|1|A1|A|533
4V65|1|A1|U|534
4V65|1|A1|A|535
4V65|1|A1|C|536
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain AA
- Transfer RNA; tRNA
- Chain AD
- 30S ribosomal protein S12
- Chain AM
- mRNA model
- Chain AO
- 30S ribosomal protein S3
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