IL_4V65_160

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V65|1|A1|U|244, 4V65|1|A1|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_160 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.4448

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V65|1|A1|G|242
4V65|1|A1|A|243
4V65|1|A1|U|244
4V65|1|A1|U|245
4V65|1|A1|A|246
4V65|1|A1|G|247
*
4V65|1|A1|C|277
4V65|1|A1|G|278
4V65|1|A1|A|279
4V65|1|A1|C|280
4V65|1|A1|G|281
4V65|1|A1|A|282
4V65|1|A1|U|283
4V65|1|A1|C|284

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S17