IL_4V65_164

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V65_164 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3396

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V65|1|A1|U|678
4V65|1|A1|C|679
*
4V65|1|A1|G|711
4V65|1|A1|A|712
4V65|1|A1|G|713

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S6

Chain BN

50S ribosomal protein L2